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  New!! MCSG Crystallization

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     "We use the Crystal

      Former as part of our 

      overall crystallization 

      strategy.."

       Dr. Terese Bergfors,

      Uppsala University      

 

     

Crystal Former- Success Stories
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Crystal Former Conference Presentations 

 

MCSG PDB Deposits 

The MCSG suite was adopted at the Midwest Center for Structural Genomics as the primary initial crystallization screen for PSI:Biology.  The structures listed below have been determined directly from the respective crystallization condition provided without additional optimization.  A far greater number of structures have been determined from the MCSG Suite following optimization of the initial conditions.  These have not been provided here.

Overall Statistics To Date: 

Total Number of Deposited Structures from ALL PSI:Biology Centers: 444

Structures from the MCSG Alone: 

Total Number of Deposited Structures: 122

Structures obtained directly from MCSG Conditions: 67 (without optimization)

Structures obtained directly from MCSG1: 31

Structures obtained directly from MCSG2: 17

Structures obtained directly from MCSG3: 11

Structures obtained directly from MCSG4: 8

Last Updated: February 1, 2012 

 

MCSG1 Successes 

PDB MCSG Condition PDB MCSG Condition
3QOK MCSG1-3 3QOO MCSG1-64
3QTB MCSG1-6 3QTD MCSG1-82
3QVQ MCSG1-16 3QWT MCSG1-45
3R14 MCSG1-50 3R1X MCSG1-82
3R6D MCSG1-25 3RHF MCSG1-83
3RHT MCSG1-84 3RNL MCSG1-11
3RNR MCSG1-73 3RPC MCSG1-60
3RPW MCSG1-60 3RQ0 MCSG1-82
3RRL MCSG1-43 3RXY MCSG1-90
3S2W MCSG1-26 3S3T MCSG1-35
3SQL MCSG1-62 3SQM MCSG1-62
3SQN MCSG1-70 3T8K  MCSG1-48
3T6O MCSG1-33 3TOV MCSG1-53
3TT2 MCSG1-53 3TY7 MCSG1-39
3U2E MCSG1-21 3U1D MCSG1-17
2UO3 MCSG1-20

 

MCSG2 Successes 

PDB MCSG Condition PDB MCSG Condition
3QUF MCSG2-93 3RJT MCSG2-52
3RNS MCSG2-49 3ROB MCSG2-79
3RPE MCSG2-48 3RQ1 MCSG2-28
3RQB MCSG2-40 3RQZ MCSG2-76
3RRI   MCSG2-19 3SHO MCSG2-66
3SOY MCSG2_22 3TEV MCSG2-70
3TVA MCSG2-59 3U4Y MCSG2-89
3TZT MCSG2-14 2UO2 MCSG2-27
3UPS MCSG2-55

 

 

 MCSG3 Successes

PDB MCSG Condition PDB MCSG Condition
3QOC MCSG3-17 3R7A MCSG3-58
3R89 MCSG3-26 3RI2 MCSG3-74
3RKJ MCSG3-78 3RMS MCSG3-85
3SG0 MCSG3-45 3RPD MCSG3-40
3TEB MCSG3-11 3TO3 MCSG3-85
3TX6 MCSG3-58

 

 

 MCSG4 Successes

PDB MCSG Condition PDB MCSG Condition
3QSG MCSG4-88 3QZ6 MCSG4-49
3R0V MCSG4-69 3SJR MCSG4-90
3SNR MCSG4-80 3T0N MCSG4-82
3U2R MCSG4-28 3UK0 MCSG4-80
 

 

 

 

MCSG Crystallization Screen References 

(1) Kim Y, Babnigg G, Jedrzejczak R, Eschenfeldt WH, Li H, Maltseva N, Hatzos-Skintges C, Gu M, Makowska-Grzyska M, Wu R, An H, Chhor G & Joachimiak A. (2011) High-throughput protein purification and quality assessment for crystallization. Methods 55(1): 12-28. DOI: 10.1016/i.ymeth.2011.07.010  

 

Crystal Former - Customer Stories 

 (1) Crystallization and imaging of fluorescent protein crystals using the Crystal Former

Crystal Formers have been implemented in a number of product development ventures in recent months.  In one such project,  an RNA binding protein from the hyperthermophile Thermococcus thioreducens was crystallized using the high throughput Crystal Formers (CF-HT) by Dr. Marc Pusey of iXpressGenes.  The protein was trace labeled with approximately 0.3% carboxyrhodamine.  Images were produced as part of a project to develop a low-cost fluorescence and white light plate imager.  This work also demonstrates the ability of this new device to image volumes as low as 30 nL.


 (2) Bacterial Drug Targets 

Methicillin-resistant Staphylococcus aureus and Helicobacter pylori are two major bacterial pathogens with direct impact on human health. MRSA exhibits resistance to the broad-spectrum antibiotics commonly used to treat staph strains. Most MRSA infections occur in hospitals and related health care centers and is responsible for serious skin and soft tissue infections and for a serious form of pneumonia. H pylori are resident in the stomachs and small intestines of approximately 50% people world-wide. While for many people H. pylori infection is asymptomatic, it is responsible for most ulcers, many cases of stomach inflammation and stomach cancer. Researchers at the University Health Network, led by Dr. Nickolay Chirgadze, have been investigating the protein structures of numerous proteins unique to these pathogenic bacteria with the intention of finding novel drug targets. Of three proteins that initially failed the vapor diffusion-based crystallization screening, two were successfully crystallized using only the standard 48 conditions that comprise the SmartScreen™ and the Crystal Former™. Furthermore, crystallization conditions for both proteins could be readily translated into vapor diffusion with minimal optimization. 

 

(3) LeuT Integral Membrane Protein

Integral membrane proteins comprise a highly challenging class of structural biology targets. The LeuT transporter has a bundle of 12 alpha-helices that for a transport channel through the cell membrane and plays an important role in synapse clearage following the transduction of a nerve signal. Many antidepressant drugs, and recreational drugs, target LeuT and similar transporters, thus structural knowledge of the transport mechanism and recognition therapeutics is a high importance. Recent crystal trials with the Crystal Former have resulted in the identification of crystallization conditions for the LeuT transporter. 

 

 

(4) Malaria Drug Targets 

Malaria is a life-threatening disease caused by the Plasmodium parasite that is transmitted to the human host through mosquito bites. In 2008, the World Health Organization recorded 247 million cases of malaria and almost 1 million deaths. In Africa, a child dies every 45 seconds from malarial infection, accounting for 20% of childhood deaths. Growing resistance to antimalarial treatment has spread rapidly in recent decades, undermining malaria control efforts. Structure-guided identification of novel therapeutic protein targets from Plasmodium species and the further characterization of inhibitory complexes for such targets has become a key approach in the search for new malaria therapies. One such protein has been crystallized by Dr. Terese Bergfors using the Crystal Former.
 
 
 
 

(3) Stojanoff V, Jakoncic J, Oren DA, Nagarajan V, Navarro Poulsen JC, Adams-Cioaba MA, Bergfors T & Sommer MOA (2011). From Screen to structure with a harvestable microfluidic device. Acta Cryst F67:971-975.  DOI:10.1107/S174430911102445 

(2) Stewart PDS, Kolek SA, Briggs RA, Chayen NE & Baldock PFM (2011) Random microseeding: a theoretical and practical exploration of seed stability and seeding techniques for successful protein crystallization. Cryst. Growth Des. DOI: 10.1021/cg2001442. 

 (1) Terese Bergfors (2009) The rapid crystallization strategy for structure-based inhibitor design. From molecules to medicines: Structure of biological macromolecules and its relevance in combating new diseases and bioterrorism. Sussman JL & Spadon P. Eds. ISBN 978-90-481-2337-7

Crystal Former - Conference Presentations 

(1) Weger A, Kim YC, Adams-Cioaba MA, Sommer M & Joachimiak A (2010) Microfluidic Crystal Formers for high throughput screening and optimization.  NIGMS Workshop: Enabling technologies in structure and function. View Here

 

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